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A molecular-based identification resource for the arthropods of Finland

Publiceringsår

2022

Upphovspersoner

Roslin, Tomas; Somervuo, Panu; Pentinsaari, Mikko; Hebert, Paul D. N.; Agda, Jireh; Ahlroth, Petri; Anttonen, Perttu; Aspi, Jouni; Blagoev, Gergin; Blanco, Santiago; Chan, Dean; Clayhills, Tom; deWaard, Jeremy; deWaard, Stephanie; Elliot, Tyler; Elo, Riikka; Haapala, Sami; Helve, Eero; Ilmonen, Jari; Hirvonen, Petri; Ho, Chris; Itämies, Juhani; Ivanov, Vladislav; Jakovlev, Jevgeni; Juslén, Aino; Jussila, Reijo; Kahanpää, Jere; Kaila, Lauri; Jari‐PekkaKaitila, undefined; Kakko, Ari; Kakko, Iiro; Karhu, Ali; Karjalainen, Sami; Kjaerandsen, Jostein; Koskinen, Janne; Laasonen, Erkki M.; Laasonen, Leena; Laine, Erkka; Lampila, Petri; Levesque‐Beaudin, Valerie; Lu, Liuqiong; Lähteenaro, Meri; Majuri, Pekka; Malmberg, Sampsa; Manjunath, Ramya; Martikainen, Petri; Mattila, Jaakko; McKeown, Jaclyn; Metsälä, Petri; Miklasevskaja, Margarita; Miller, Meredith; Miskie, Renee; Muinonen, Arto; Veli‐MattiMukkala, undefined; Naik, Suresh; Nikolova, Nadia; Nupponen, Kari; Ovaskainen, Otso; Österblad, Ika; Paasivirta, Lauri; Pajunen, Timo; Parkko, Petri; Paukkunen, Juho; Penttinen, Ritva; Perez, Kate; Pohjoismäki, Jaakko; Prosser, Sean; Raekunnas, Martti; Rahulan, Miduna; Rannisto, Meeri; Ratnasingham, Sujeevan; Raukko, Pekka; Rinne, Aki; Rintala, Teemu; Miranda Romo, Susana; Salmela, Jukka; Salokannel, Juha; Savolainen, Riitta; Schulman, Leif; Sihvonen, Pasi; Soliman, Dina; Sones, Jayme; Steinke, Claudia; Ståhls, Gunilla; Tabell, Jukka; Tiusanen, Mikko; Várkonyi, Gergely; Vesterinen, Eero J.; Viitanen, Esko; Vikberg, Veli; Viitasaari, Matti; Vilen, Jussi; Warne, Connor; Wei, Catherine; Winqvist, Kaj; Zakharov, Evgeny; Mutanen, Marko
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Abstrakt

To associate specimens identified by molecular characters to other biological knowledge, we need reference sequences annotated by Linnaean taxonomy. In this paper, we 1) report the creation of a comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland), 2) publish this library, and 3) deliver a new identification tool for insects and spiders, as based on this resource. The reference library contains mtDNA COI barcodes for 11,275 (43%) of 26,437 arthropod species known from Finland, including 10,811 (45%) of 23,956 insect species. To quantify the improvement in identification accuracy enabled by the current reference library, we ran 1,000 Finnish insect and spider species through the Barcode of Life Data system (BOLD) identification engine. Of these, 91% were correctly assigned to a unique species when compared to the new reference library alone, 85% were correctly identified when compared to BOLD with the new material included, and 75% with the new material excluded. To capitalize on this resource, we used the new reference material to train a probabilistic taxonomic assignment tool, FinPROTAX, scoring high success. For the full-length barcode region, the accuracy of taxonomic assignments at the level of classes, orders, families, subfamilies, tribes, genera, and species reached 99.9%, 99.9%, 99.8%, 99.7%, 99.4%, 96.8%, and 88.5%, respectively. The FinBOL arthropod reference library and FinPROTAX are available through the Finnish Biodiversity Information Facility (www.laji.fi). Overall, the FinBOL investment represents a massive capacity-transfer from the taxonomic community of Finland to all sectors of society.
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Organisationer och upphovspersoner

Åbo universitet

Winqvist Kaj

Elo Riikka

Penttinen Ritva

Vesterinen Eero

Jyväskylä universitet

Ovaskainen Otso Orcid -palvelun logo

Östra Finlands universitet

Pohjoismäki Jaakko

Helsingfors universitet

Juslén Aino

Vesterinen Eero J.

Ståhls Gunilla

Mattila Jaakko

Koskinen Janne

Kahanpää Jere

Jakovlev Jevgeni

Paukkunen Juho

Salmela Jukka

Vilen Jussi

Kaila Lauri

Schulman Leif

Viitasaari Matti

Rannisto Meeri

Lähteenaro Meri

Tiusanen Mikko

Ovaskainen Otso

Somervuo Panu

Sihvonen Pasi

Elo Riikka

Savolainen Riitta

Malmberg Sampsa

Pajunen Timo

Roslin Tomas

Uleåborgs universitet

Aspi Jouni Orcid -palvelun logo

Mutanen Marko Orcid -palvelun logo

Ivanov Vladislav

Finlands miljöcentral

Schulman Leif Orcid -palvelun logo

Várkonyi Gergely Orcid -palvelun logo

Ahlroth Petri

Publikationstyp

Publikationsform

Artikel

Moderpublikationens typ

Tidning

Artikelstyp

En originalartikel

Målgrupp

Vetenskaplig

Kollegialt utvärderad

Kollegialt utvärderad

UKM:s publikationstyp

A1 Originalartikel i en vetenskaplig tidskrift

Publikationskanalens uppgifter

Moderpublikationens namn

Molecular Ecology Resources

Förläggare

Wiley-Blackwell

Volym

22

Nummer

2

Sidor

803-822

Publikationsforum

63525

Publikationsforumsnivå

1

Öppen tillgång

Öppen tillgänglighet i förläggarens tjänst

Ja

Öppen tillgång till publikationskanalen

Delvis öppen publikationskanal

Parallellsparad

Ja

Övriga uppgifter

Vetenskapsområden

Ekologi, evolutionsbiologi; Genetik, utvecklingsbiologi, fysiologi

Nyckelord

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Publiceringsland

Förenade kungariket

Förlagets internationalitet

Internationell

Språk

engelska

Internationell sampublikation

Ja

Sampublikation med ett företag

Nej

DOI

10.1111/1755-0998.13510

Publikationen ingår i undervisnings- och kulturministeriets datainsamling

Ja