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Novel ZNF414 activity characterized by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data

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10.1016/j.bbagrm.2022.194811
Rodriguez-Martinez, Alejandra; Vuorinen, Elisa M.; Shcherban, Anastasia; Uusi-Mäkelä, Joonas; Rajala...
Biochimica et biophysica acta: gene regulatory mechanisms2022Publicationer information ikon

Differential ATAC-seq and ChIP-seq peak detection using ROTS

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10.1093/nargab/lqab059
Faux Thomas, Rytkönen Kalle T., Mahmoudian Mehrad, Paulin Niklas, Junttila Sini, Laiho Asta, Elo Lau...
NAR Genomics and Bioinformatics: Nucleic Acids Research Genomics and Bioinformatics2021Publicationer information ikon

Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data

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10.7717/peerj.3742
Dzida, Tomasz; Iqbal, Mudassar; Charapitsa, Iryna; Reid, George; Stunnenberg, Henk; Matarese, Filome...
PeerJ2017Publicationer information ikon

Optimized detection of transcription factor binding sites in ChIP-seq experiments

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10.1093/nar/gkr839
Elo, Laura L.; Kallio, Aleksi; Laajala, Teemu D.; Hawkins, R. David; Korpelainen, Eija; Aittokallio,...
Nucleic acids research2012Publicationer information ikon

Genome-wide analysis of primary microRNA expression using H3K36me3 ChIP-seq data

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10.1016/j.csbj.2021.03.035
Turunen, Tanja; Hernández de Sande, Ana; Pölönen, Petri; Heinäniemi, Merja
Computational and Structural Biotechnology Journal2021Publicationer information ikon

Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data

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10.1186/s12859-015-0797-4
Eggeling, Ralf; Roos, Teemu; Myllymäki, Petri; Grosse, Ivo
BMC Bioinformatics2015Publicationer information ikon

FracNoC A fractal on-chip interconnect architecture for System-on-Chip

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DOI
10.1109/HPCSim.2013.6641416
Chariete, A.; Bakhouya, M.; Gaber, J.; Wack, M.
International Conference on High Performance Computing & Simulation2013Publicationer information ikon

Modeling Stress in Ultra-Thin Flip Chip

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Marjamäki, P.; Reinikainen, T.; Kivilahti, J.
Helsinki University of Technology2000Publicationer information ikon

The REPLICA on-chip network

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10.1109/NORCHIP.2016.7792877
Forsell, Martti; Roivainen, Jussi; Leppänen, Ville
Nordic Circuits and Systems Conference2016Publicationer information ikon

Chip-to-Chip Interfaces for Large-Scale Highly Configurable mmWave Phased Arrays

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10.1109/jssc.2023.3273502
Sethi, Alok; Akbar, Rehman; Hietanen, Mikko; Aikio, Janne P.; Kursu, Olli; Jokinen, Markku; Leinonen...
IEEE journal of solid-state circuits2023

Novel ZNF414 activity characterized by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data

Referentgranskad
Öppen tillgång
DOI
10.1016/j.bbagrm.2022.194811
2022

Differential ATAC-seq and ChIP-seq peak detection using ROTS

Referentgranskad
Öppen tillgång
DOI
10.1093/nargab/lqab059
2021

Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data

Referentgranskad
Öppen tillgång
DOI
10.7717/peerj.3742
2017

Optimized detection of transcription factor binding sites in ChIP-seq experiments

Referentgranskad
Öppen tillgång
DOI
10.1093/nar/gkr839
2012

Genome-wide analysis of primary microRNA expression using H3K36me3 ChIP-seq data

Referentgranskad
Öppen tillgång
DOI
10.1016/j.csbj.2021.03.035
2021

Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data

Referentgranskad
Öppen tillgång
DOI
10.1186/s12859-015-0797-4
2015

FracNoC A fractal on-chip interconnect architecture for System-on-Chip

Referentgranskad
DOI
10.1109/HPCSim.2013.6641416
2013

Modeling Stress in Ultra-Thin Flip Chip

Referentgranskad
2000

The REPLICA on-chip network

Referentgranskad
DOI
10.1109/NORCHIP.2016.7792877
2016

Chip-to-Chip Interfaces for Large-Scale Highly Configurable mmWave Phased Arrays

Referentgranskad
Öppen tillgång
DOI
10.1109/jssc.2023.3273502
2023