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Improving bioinformatics software quality through teamwork

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DOI
10.1093/bioinformatics/btae632
Ferenc, Katalin; Rauluseviciute, Ieva; Hovan, Ladislav; Kumar, Vipin; Kuijjer, Marieke L.; Mathelier...
Bioinformatics2024

A framework for space-efficient variable-order Markov models

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DOI
10.1093/bioinformatics/btz268
Cunial, Fabio; Alanko, Jarno; Belazzougui, Djamal
Bioinformatics2019

In silico PCR analysis: a comprehensive bioinformatics tool for enhancing nucleic acid amplification assays

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10.3389/fbinf.2024.1464197
Kalendar, Ruslan; Shevtsov, Alexandr; Otarbay, Zhenis ; Ismailova, Aisulu
Frontiers in bioinformatics2024

Interactive exploration of heterogeneous biological networks with Biomine Explorer

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10.1093/bioinformatics/btz509
Podpecan, Vid; Ramšak, Živa; Gruden, Kristina; Toivonen, Hannu; Lavrac, Nada
Bioinformatics2019

18th International Workshop on Algorithms in Bioinformatics (WABI 2018)

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10.4230/LIPIcs.WABI.2018.0
Parida, Laxmi; Ukkonen, Esko
Leibniz International Proceedings in Informatics2018

Tribus:semi-automated discovery of cell identities and phenotypes from multiplexed imaging and proteomic data

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10.1093/bioinformatics/btaf082
Kang, Ziqi; Szabo, Angela; Farago, Teodora; Perez-Villatoro, Fernando; Junquera, Ada; Shah, Saundary...
Bioinformatics2025

Jellyfish:integrative visualization of spatio-temporal tumor evolution and clonal dynamics

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10.1093/bioinformatics/btaf091
Lavikka, Kari; Maarala, Altti Ilari; Oikkonen, Jaana; Hautaniemi, Sampsa
Bioinformatics2025

De novo clustering of large long-read transcriptome datasets with isONclust3

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10.1093/bioinformatics/btaf207
Petri, Alexander J.; Sahlin, Kristoffer
Bioinformatics2025

Sponge:simple prior omics network GEnerator

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10.1093/bioinformatics/btaf320
Hovan, Ladislav; Kuijjer, Marieke L.
Bioinformatics2025

Exploiting uniqueness: seed-chain-extend alignment on elastic founder graphs

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DOI
10.1093/bioinformatics/btaf225
Rizzo, Nicola; Caceres Reyes, Manuel Ariel; Mäkinen, Veli
Bioinformatics2025

Improving bioinformatics software quality through teamwork

Referentgranskad
Öppen tillgång
DOI
10.1093/bioinformatics/btae632
2024

A framework for space-efficient variable-order Markov models

Referentgranskad
DOI
10.1093/bioinformatics/btz268
2019

In silico PCR analysis: a comprehensive bioinformatics tool for enhancing nucleic acid amplification assays

Referentgranskad
Öppen tillgång
DOI
10.3389/fbinf.2024.1464197
2024

Interactive exploration of heterogeneous biological networks with Biomine Explorer

Referentgranskad
Öppen tillgång
DOI
10.1093/bioinformatics/btz509
2019

18th International Workshop on Algorithms in Bioinformatics (WABI 2018)

Referentgranskad
Öppen tillgång
DOI
10.4230/LIPIcs.WABI.2018.0
2018

Tribus:semi-automated discovery of cell identities and phenotypes from multiplexed imaging and proteomic data

Referentgranskad
Öppen tillgång
DOI
10.1093/bioinformatics/btaf082
2025

Jellyfish:integrative visualization of spatio-temporal tumor evolution and clonal dynamics

Referentgranskad
Öppen tillgång
DOI
10.1093/bioinformatics/btaf091
2025

De novo clustering of large long-read transcriptome datasets with isONclust3

Referentgranskad
Öppen tillgång
DOI
10.1093/bioinformatics/btaf207
2025

Sponge:simple prior omics network GEnerator

Referentgranskad
Öppen tillgång
DOI
10.1093/bioinformatics/btaf320
2025

Exploiting uniqueness: seed-chain-extend alignment on elastic founder graphs

Referentgranskad
Öppen tillgång
DOI
10.1093/bioinformatics/btaf225
2025